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GSOC Project Ideas 2019

GMOD.org recent changes - Fri, 02/08/2019 - 19:03

‎Template: Add Galaxy Error classification project.

← Older revision Revision as of 00:03, 9 February 2019 Line 26: Line 26:  **''Skill level:'' Basic, Medium or Advanced. **''Skill level:'' Basic, Medium or Advanced.  **''Mentors:'' name + contact details of the lead mentor, name + contact details of 1 or 2 backup mentors. **''Mentors:'' name + contact details of the lead mentor, name + contact details of 1 or 2 backup mentors.  +  +  +== Automated Bioinformatics Help in Galaxy ==  +  +*''Brief explanation:''  +** [https://galaxyproject.org/ Galaxy] users often encounter errors when trying to run a bioinformatics analysis. These errors may be user or data errors (e.g. misformatted dataset) or errors due to underlying computing hardware (e.g. disk is full). Helping users and Galaxy support staff determine the kind of error they encountered would be useful because a user can likely address the first type of error, while the second type requires expert invention.  +** This project will improve Galaxy’s error system by using heuristics or machine learning to identify common types of user/data errors and make suggestions on likely causes of the error and how they might be fixed. This will benefit Galaxy users with clear and actionable error messages and support staff by reducing the amount of reported, non-system errors.  +* ''Expected results:''  +** Create a tool for analyzing, identifying, and classifying common error messages from the extensive history of error messages from the main public Galaxy server (https://usegalaxy.org).  +*** The diversity and size of this data suggests a machine learning approach, but the specific approach taken would be decided by the student and mentor.  +** Extend Galaxy’s tool definition syntax to support defining common error classes and suggested resolutions.  +** Update Galaxy’s user interface to display potential resolutions and suggested actions based on the types of errors found in an analysis.  +* ''Project Home Page URL:'' [https://galaxyproejct.org/ galaxyproject.org]  +* ''Project paper reference and URL:'' [https://doi.org/10.1093/nar/gky379  The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update], Enis Afgan et al., ''Nucleic Acids Research'', Volume 46, Issue W1, 2 July 2018, Pages W537–W544, https://doi.org/10.1093/nar/gky379  +* ''Knowledge prerequisites:''  programming language(s) to be used, plus any other particular computer science skills needed.  +* ''Skill level:'' Medium.  +* ''Mentors:''  +     [[Category:GSoC]] [[Category:GSoC]] Clements
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