This is a simple mock up of an interface that I could imagine for displaying several species orthologs. Of course, since Alliance jbrowse currently doesn't have variations or protein domains, it isn't terribly interesting. A few notes:

• Each of these JBrowse windows is live and stored in a div (NOT an iframe)
• I left out fly because it wasn't clear to me what the appropriate ortholog is
• The work JBrowse is coming from WormBase (so I could include variations and protein domains)
• The gene in worm is reversed relative to the other species, but JBrowse doesn't do "flip" like GBrowse does, so I added buttons to flip the div (which means all of the text get flipped too, but it still works like normal)
• Ideally, each of these divs would resize to the minimum required but that adds more complicated javascript that is needed (we do have that at WormBase for embedding)

Human

Mouse

Rat

Zebrafish

Yeast

WormFlipUnflip