scottca.in

Expression

Variation

Expression

This page is designed to load all of the non-modENCODE tracks from the WormBase staging jbrowse site so that I can scroll through and make sure they look right. Note that this page doesn't work on current versions of Safari because of something JBrowse is doing repeatedly on the page.

This is a test of a jbrowse instance with modified javascript to make scrolling inside if iframes better

with bubble:

without:

This is a simple mock up of an interface that I could imagine for displaying several species orthologs. Of course, since Alliance jbrowse currently doesn't have variations or protein domains, it isn't terribly interesting. A few notes:

This post is to experiment with embedding jbrowse in another page (Drupal for the moment, but the plan is to put it elsewhere when I get it working).

Note that I'm going to be pointing it at a temporary server, so if you come across this post after I've sorted it all out, there may be nothing here. Sorry.

This is a table to try to create two sets of three color gradients to use in JBrowse for show different reading frames. The goal is to be colorblind safe.

This post is a placeholder so I can upload this image to use elsewhere in a discussion.

This seems like a bug: there is only one unc-62 feature in this sparse track.

ETA: not a bug--I was not configuring it correctly. Besides, this thread is here just to give me a place to post the picture to get an opinion.